rs261845904 SNP Detail

Summary

• ID
  rs261845904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96140859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGATATC AGAAACCAGC
  CTGTCATTCA CTTTGGCGTT GAAGCATGGC CTATCTCAGG GGGCAGGACC AGGACTCTTC
  CCTCCCACAA GGGCTGGGCA GTTTCTGCAA GCTCAGAGAG CTCTGAGCAG TTTTTCAGGA
  GTTTCTCCTC CCCTTTTACT GGGAAATTCA TGGTGCATTT GCTCTGCCTT CAAAATGCGG
  Y
  AAGGTCTTCT GCTTTCTAAC TGACTGCCTT GGAGCCAGCA GATAGTCGGA CATGTACAAT
  TCGAATTATG CAGGTCTTGT GAGTAAGTTA ATTTTATTTT TAAACTACTT AAAATTCAGA
  TGGCATTTAG AAAAGTGATA GCTTGGATTT AGGCATTTTA TCATTTTTTT TACCTTTAAG
  CTTTTTTTTT TTTTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107364	CHEV_9_96159225	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261845904					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96140859 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	414 bp upstream
Tssr86589	transcription start site region 86589	95 bp downstream
Tssr86590	transcription start site region 86590	80 bp downstream
Tssr86591	transcription start site region 86591	21 bp downstream
Tssr86592	transcription start site region 86592	4 bp downstream
Tssr86593	transcription start site region 86593	within coordinates
Tssr86594	transcription start site region 86594	202 bp upstream
Tssr86595	transcription start site region 86595	440 bp upstream
Tssr86596	transcription start site region 86596	464 bp upstream