rs261847298 SNP Detail

Summary

• ID
  rs261847298
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:112454243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAAGGT ATGGCTCTCC
  TTTCAATTGC AGGACAACAG TGGTGGGCAG GTTATGAGGG GGGCCACATG AGAGCTAGTT
  CTGCATAGGG AAAGCTCCTG GTGGGAAGGA GGCAGCTACT GCTGGATGCC AAGCAAGGGA
  GGGAGAGCCC CATCTTCTCC CTTCCCAGTC TTCAGTGCCT CCCTCCCATG TATCCTCCCA
  W
  GCAGGATAAA GGCATCTGGA GATACAGTCA TCACAGATGA AGGTGCAGAA CATCTCTGGA
  GGAGAGAGAG GGAGGAGCAT AATGCTTTTC CCAAAGATGG ATGAACTGAG GTACTAAGAA
  GACAGGTCAT GCGTCCATGG ATGTAGTTCA GTTGGTAGAG GGCTTACCTA GAAAGCACAT
  GCCTTCAATG CCCAACAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324529027	CHEV_13_113107917	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261847298					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112454243 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd55	ankyrin repeat domain 55			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr486335	regulatory region 486335			553 bp distal
Tssr121103	transcription start site region 121103			680 bp upstream
Tssr121104	transcription start site region 121104			707 bp upstream
Tssr121105	transcription start site region 121105			738 bp upstream