rs261848408 SNP Detail

Summary

• ID
  rs261848408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36725933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCGCAGAA GATTCTGGTT
  TGTTGCGTCT TTCCTGGCCG GTTGCGAACG CGTGTAAGAT CACTCCTCTA GCAACATTCA
  GCTAATGGAA CATCCCCATG TTTTGTGTAG CTCCTCTGAG CTCAGCACAA AATGGAGAAT
  TCCCTTTTTC TAGCAGGGCT TCCACTTCTC TGACTACCCC CCCATCCTCT ACCTGAGGAA
  R
  GTAATGGGGT CCTTGGCAAA CCTACAAATT CCTCTCCCTA CACCCCATAA GAACCTGCCC
  AGCAAATACC TGGGATTCCT GGAGAGCTTT TCCACACAAA AGAGGCGTTC CCAGTTCACT
  GAGCTCCAGC CAGTCATCAA CATTCACCCT GAAAACTCCT CTCCACTCTC CAAAGTTCAT
  ATACAGCCCT TGTCCACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324923450	CHEV_15_36655444	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261848408					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36725933 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	553 bp upstream
Cpgi7034	CpG island 7034	1647 bp proximal
Gm41297	predicted gene, 41297	within coordinates
Gm49263	predicted gene, 49263	453 bp downstream
Rr306673	regulatory region 306673	1933 bp distal
Tssr131078	transcription start site region 131078	412 bp downstream
Tssr131079	transcription start site region 131079	631 bp upstream
Tssr131080	transcription start site region 131080	672 bp upstream
Tssr131081	transcription start site region 131081	703 bp upstream
Tssr131082	transcription start site region 131082	978 bp upstream
Tssr131083	transcription start site region 131083	1171 bp upstream
Tssr131084	transcription start site region 131084	1217 bp upstream