rs261854758 SNP Detail

Summary

• ID
  rs261854758
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74539748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACTCTTCA AACTAAAATT TGACAAGCTT
  CAACTAGGAA AAGGACCTAC TGAGTGAAGG AGTGGGAATA GAAATCAAAG ATAGAAAATA
  AGGTAAAAAC ACCACATCTT TGACATTCTG ACAGACTTTG CAGCTCTGAA AATGCACCTT
  Y
  GTTTAGGGCC ACACTGGCCC CTGAACCATA GATTTACACA TACAGAAAAT GCTGATAATA
  AATGTAAAAA TGAATGTTTC TGCAGCTACC AAAGAGCATA GGTTTCCAAA TAAAGACCTT
  GAGGAATTAC CCTCCCCCAT TCCTCTCTTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348120	CHEV_2_74547461	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261854758					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74539748 () rs orientation: forward

Symbol	Name	Function Class
Gm38462	predicted gene, 38462	within coordinates
Hoxd3os1	homeobox D3, opposite strand 1	640 bp downstream
Hoxd8	homeobox D8	1471 bp downstream
Igs15	intergenic site 15	within coordinates
Rr559369	regulatory region 559369	1301 bp distal
Rr559370	regulatory region 559370	266 bp distal
Rr559371	regulatory region 559371	129 bp proximal
Tssr18431	transcription start site region 18431	309 bp upstream