rs261858788 SNP Detail

Summary

• ID
  rs261858788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:92491762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGAGGTG GCTGTGGGCA
  GCAGGTGCAC TTTTTGGGGC AGCACGAACA CTTCTGTGGG CAGCATGGTG GTTTCAGCGG
  ACAAGGACAG GTGGCTGGAC AGGGACAGGG ACAGGGGGGA GGACAGGGAC AGGGCTTTGG
  AGGGCAACAT GGGGACTTGG GTGGGCAGCA TGGGGATTTG GGACAGCAAG GTGGTTTCTG
  Y
  GGACAGCACG GTTTAGGTGG GCAACATGGT TTTGGTGGGC AGCATGGAGG GGGGCACTGG
  TTGGTTTTGG ATGGATCACT CATCTTCTTT AGAGTTGGAG TTCCTAGGGA TAAAAAAAAA
  TATTCAAATG ACTATCTGGA AGTCGACTTT CATCATGACC TTTTTTTCCT TTTTTTTTTC
  AATTTTTTAT TAGATATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358859058	MGP_WTSI_3_92388377	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261858788					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358859058	MGP_WTSI_3_92388377	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:92491762 () rs orientation: forward

Symbol	Name	Function Class
Smcp	sperm mitochondria-associated cysteine-rich protein	within coordinates
Tssr30302	transcription start site region 30302	322 bp downstream
Tssr30303	transcription start site region 30303	62 bp downstream
Tssr30304	transcription start site region 30304	39 bp downstream
Tssr30305	transcription start site region 30305	16 bp downstream
Tssr34305	transcription start site region 34305	441 bp upstream
Tssr34306	transcription start site region 34306	279 bp upstream
Tssr34307	transcription start site region 34307	65 bp upstream
Tssr34308	transcription start site region 34308	50 bp upstream
Tssr34309	transcription start site region 34309	18 bp upstream
Tssr34310	transcription start site region 34310	6 bp upstream
Tssr34311	transcription start site region 34311	23 bp downstream
Tssr34312	transcription start site region 34312	48 bp downstream
Tssr34313	transcription start site region 34313	1745 bp downstream