rs261865754 SNP Detail

Summary

• ID
  rs261865754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:55041547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCCTCC CTCTCTGGAA
  CCCCGGGTCC TTGTGCATCC TGGGCAAGGT CTGTATCCCT GAGCTATATC TCGAGTTCAT
  GTCATGTACT TTCAAAGACA CACCAAATAA GTAGCTGTAA GTTTTACGTA AATGGCATTG
  TTAGGATTGG ATATAAGATA CCACCATTGT TTGTCAGGGT TGAGGCATTC CCATAATCCT
  Y
  GCATTCAGAA AGCTGAAGCA GGAGAATTGC AAATTTGAGA CCAGTCTGGA TTCCAGAATG
  AAGCTTTGAC TAGGGAAAAA TCTATAAGTC TGAGTTTGGG GCAGTGAAAA TGGAACACAG
  AGTAATCAGG TGATCCTTTG TTTACAGGAA GATCTATGTC TGTATGGGGA GATGGACTGG
  GATAGAGACA GGGCAGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383435000	MGP_WTSI_11_54964223	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	T	T	C	C	T	C	C	C	C	T	T	T	C	C	C	T	C	C	T	T	T	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261865754					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	T	T	C	C	T	C	C	C	C	T	T	T	C	C	C	T	C	C	T	T	T	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383435000	MGP_WTSI_11_54964223	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:55041547 () rs orientation: forward

Symbol	Name	Function Class
Gm31688	predicted gene, 31688	within coordinates
Rr447513	regulatory region 447513	1946 bp distal
Slc36a3	solute carrier family 36 (proton/amino acid symporter), member 3	Intron
Tssr108046	transcription start site region 108046	958 bp downstream
Tssr108047	transcription start site region 108047	977 bp downstream
Tssr108048	transcription start site region 108048	982 bp downstream