rs261871969 SNP Detail

Summary

• ID
  rs261871969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51323722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aGGCGAAGG GAGTGTCAGG ACAGGGCGGG
  CGCGGCGACC CCGGAGGCCT AGTGGCGGCG GAGTGAAGGC TTCAAGGCTG AAGTGAGCTC
  GGGAACGGCA GTGGCGGCGG CGGGCGGACA AACGGACTGA GCGAGCCGGG CGGTGGCGGG
  R
  GCCGCGGGAG GAGCCGGAAC CATGCCGGCC GTGAGCCTCC CGCCCAAGGA GAACGCGCTC
  TTCAAGCGGA TCTTGGTGAG TGTGAGGCGG CGAGCGGGCA CCGGGGATGG TTTCGCTGGG
  AGCCGGGCCT GTCAGCCCCG AGCCCGGGCG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320762672	CHEV_3_51220223	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261871969					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51323722 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13139	CpG island 13139			within coordinates
Gm50622	predicted gene, 50622			82 bp upstream
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit			mRNA-UTR
				Noncoding-Transcript-Variant
Rr397658	regulatory region 397658			168 bp downstream
Rr576315	regulatory region 576315			275 bp distal
Rr576316	regulatory region 576316			within coordinates
Rr576317	regulatory region 576317			1406 bp proximal
Tssr29053	transcription start site region 29053			328 bp downstream
Tssr29054	transcription start site region 29054			257 bp downstream
Tssr29055	transcription start site region 29055			300 bp upstream