rs261884921 SNP Detail

Summary

• ID
  rs261884921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTCCAG ATAGTCTCTC
  ATTCATGTTC CTATAGGCTA ACCTGACCTA GAAAATCCCT CACGGGCAAG CTCATAGGTT
  TGCCCCTAGA TGATTCTAGA GCCCGTCAGG GAGTCAGTCA TTAACCATCT TGCACACGCA
  TGAGATATTC TGTTTCAAAC AAAAAGTGGA AGGTACCCAA GGACCAGAAC TTATCCTAAT
  R
  ACCATGCACA CGCTATGCTC CCTGCACTCC TGGAACTGCT TCCAAGCAAG TGGCTGTCTC
  CTCTGCAGCC CTGTCCCAAG CCCTCAACAC CACGGTGCTG CAGGGCATGG CCGGCCAGTC
  CTTGAGGGTG TCATGTACTT ATGACGCCTT GAAGCACTGG GGGAGACGCA AGGCCTGGTG
  TCGGCAGCTG GGTGAGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408120	CHEV_17_48487713	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261884921					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655416 () rs orientation: forward

Symbol	Name	Function Class
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1971 bp downstream
Tssr145094	transcription start site region 145094	1943 bp downstream
Tssr145095	transcription start site region 145095	1895 bp downstream
Tssr145096	transcription start site region 145096	1862 bp downstream
Tssr145097	transcription start site region 145097	857 bp downstream
Tssr145098	transcription start site region 145098	515 bp downstream
Tssr145099	transcription start site region 145099	92 bp upstream
Tssr145100	transcription start site region 145100	121 bp upstream
Tssr145101	transcription start site region 145101	158 bp upstream
Tssr145102	transcription start site region 145102	257 bp upstream
Tssr148525	transcription start site region 148525	302 bp downstream