rs261896928 SNP Detail

Summary

• ID
  rs261896928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153621126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGTAGAA ACCAAATCGC
  TGTAGTCCTA GGCGAAGGAG CAGGAGAAAC CCCGCCTTCC CTCGCTCCCC TATCCCGGGT
  GCTACCCCTG CTAGCCGCCT GCCTCTGGCC CCGCCTACCA TAGCCTCGCC CCTCCCACCT
  ACTCTCGCCA ACCAGTTGCC GCTTCGGCCA CGTGGAGAGT AGTTTTCCTC CAGCCGCAAT
  Y
  TCAGCGCCTG TCCTACCCAC GCGCACATTT GTCTTTCCCA GACGAGGTTA ACGTCTCATC
  TCGCACAGCT GTGCCTTCTG AGCCCTTCCC CTGGAGACAT TGTTCTCTGT GCCCCCCTTT
  GCTTCTGCTC TGTTATCCTT CCTTGATTCT CGTAGAGGAG CTTGGGAGTG CGCTCCCTGT
  TCCTAAAAGG ACTCCAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320565063	CHEV_2_153604942	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261896928					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153621126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	within coordinates
Efcab8	EF-hand calcium binding domain 8	725 bp upstream
Gm75501	predicted gene, 75501	within coordinates
Rr567738	regulatory region 567738	within coordinates
Rr567739	regulatory region 567739	517 bp proximal
Tssr20916	transcription start site region 20916	21 bp upstream
Tssr20917	transcription start site region 20917	34 bp upstream
Tssr20918	transcription start site region 20918	62 bp upstream