rs261902844 SNP Detail

Summary

• ID
  rs261902844
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98946231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATATTGAT GCTAAATGTC
  TTAAATAGAA GGTGGGCATG GCAGTGTATG CATGTAATTT TCTTGAACTA TATAGCATGG
  CTCTCTCTCT CTCTCTCTCT CTTTCTCTCT CTCTCTCTCT CTCAAAGGTT TTACCCTTGC
  CTGGCCTCAG TGGGAGAGGA AGTACCTAGC TTTGTAGAGA CTTGAAGTTG GGGGTGGGGG
  T
  TGGTGGGGGG TGGGGTGGCA CTCAGCTCAG CGGAGAAAGG GGGGGGGGAG GGAGGAAGGA
  TTGTGGGAAG GAGTAACCAG GAGGGAGGTA GTGATCAGGA TGTAAAGTGA ATAAGTACAA
  AATAAAATTG CATTAAACAC AAAAAGAAAA GAAGAAAAGG TTTCACTATG TAACTGTGTA
  TCCTTGGCTG GCCCAGAATT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	ST/bJ	WSB/EiJ
ss395148550	MGP_WTSI_15_98878781	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	ST/bJ	WSB/EiJ
rs261902844					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395148550	MGP_WTSI_15_98878781	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98946231 () rs orientation: forward

Symbol	Name	Function Class
D15Jcs28	DNA segment, Chr 15, John C. Schimenti 28	231 bp distal
Gm41399	predicted gene, 41399	within coordinates
Rr305848	regulatory region 305848	970 bp proximal
Rr311358	regulatory region 311358	998 bp distal
Rr315589	regulatory region 315589	970 bp proximal