rs261905831 SNP Detail

Summary

• ID
  rs261905831
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37465105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAACCCA TTGAATTTTG
  TTAGTGTTGT TTATAGGAGC ACGGGCAAGG GCTTCTTTAC AGCATTGTAG GCACTGTACT
  AGTGACTGCA CCCCTAAAGT AAATGTCTCT CCCTACCTCA CCAACTATTA ATTGTGTATA
  AATCTTCAGG GTGGGGTGGT ACCTCATAAG CCCCTCCTCT TTCCATGATA GAGTGTTAAT
  R
  GGCCCACTCT TGTGGAGATC TTGTGCAGGT GATCCAGCTG TTGTTAACTC AATAGCCAAG
  TCATGACTGG AAATCATCAT TCCATACCTC ACCCCCCTTC TTCTGGTTCT TAAATTCTTC
  CTACCCCTTC TTCCATGATG TTTCCTGAGC CTTGGAAGTA TTGGTATATA TGTGTCCTCT
  CTATGACTTG GCATCCAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377243241	MGP_WTSI_9_37361394	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261905831					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377243241	MGP_WTSI_9_37361394	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37465105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21585	CpG island 21585	920 bp distal
Gm46107	predicted gene, 46107	1635 bp upstream
Nrgn	neurogranin	1064 bp upstream
Rr676716	regulatory region 676716	916 bp distal
Rr676717	regulatory region 676717	460 bp distal
Rr676718	regulatory region 676718	379 bp proximal
Rr676719	regulatory region 676719	1348 bp proximal
Rr676720	regulatory region 676720	1611 bp proximal
Tssr84410	transcription start site region 84410	1805 bp upstream
Tssr84411	transcription start site region 84411	1828 bp upstream
Tssr84412	transcription start site region 84412	1836 bp upstream
Tssr84413	transcription start site region 84413	1862 bp upstream
Tssr84414	transcription start site region 84414	1884 bp upstream
Tssr88858	transcription start site region 88858	1098 bp upstream
Tssr88859	transcription start site region 88859	1068 bp upstream
Tssr88860	transcription start site region 88860	827 bp upstream
Tssr88861	transcription start site region 88861	412 bp upstream