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rs261906014 SNP Detail
Summary
  • ID
    rs261906014
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44127100 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTTTCTATC CTTCCATTTT
CTTCCTTCAT CTCTTCCATC TTTTCTTCCT CTATCTTTCT TCTCCTCCCC TTCTATTTTT
TCTCTTCTAT TTTCTCCTCA TCATCGTCCT ATTTCATTTC CTCTTCCTCA TCCTTCATAC
CTTCCTCCTG TATCTCCTGT TCATCCTTCT ACATTTCCTC TTCGTATCTA TTTCCTCCTC
Y
TCCTCAATCT CCTACCTATA CTTCATCTCC TCTTTCTCTA TCTCCTCCTA CTCTTCTACA
TCCCTTTACT TCTCCATCTC CTCCTCTGTT TTCTTCTCCA TCTGCTCTCC CTTTTCTTTC
CATCCATATC ATTCCTTATC TATCTCTCTT CTCTGCTGTT TCCTCTGCCA TCTTTCTCAG
TTTTGTTCTT CTACATCTAT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156090 MGP_WTSI_7_51733046 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261906014 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156090 MGP_WTSI_7_51733046 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127100 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2222 transcription start site region 2222 1322 bp downstream
Tssr2223 transcription start site region 2223 1143 bp downstream
Tssr2224 transcription start site region 2224 297 bp downstream
Tssr2225 transcription start site region 2225 257 bp downstream
Tssr2226 transcription start site region 2226 262 bp upstream
Tssr2227 transcription start site region 2227 1335 bp upstream
Tssr66194 transcription start site region 66194 1973 bp downstream
Tssr66195 transcription start site region 66195 1922 bp downstream
Tssr66196 transcription start site region 66196 1889 bp downstream
Tssr66197 transcription start site region 66197 1744 bp downstream
Tssr66198 transcription start site region 66198 1713 bp downstream
Tssr66199 transcription start site region 66199 1703 bp downstream
Tssr66200 transcription start site region 66200 1680 bp downstream
Tssr66201 transcription start site region 66201 1662 bp downstream
Tssr66202 transcription start site region 66202 1647 bp downstream
Tssr66203 transcription start site region 66203 1625 bp downstream
Tssr66204 transcription start site region 66204 1569 bp downstream
Tssr66205 transcription start site region 66205 1545 bp downstream
Tssr66206 transcription start site region 66206 1532 bp downstream
Tssr66207 transcription start site region 66207 1512 bp downstream
Tssr66208 transcription start site region 66208 1498 bp downstream
Tssr66209 transcription start site region 66209 1467 bp downstream
Tssr66210 transcription start site region 66210 1434 bp downstream
Tssr66211 transcription start site region 66211 1394 bp downstream
Tssr66212 transcription start site region 66212 1351 bp downstream
Tssr66213 transcription start site region 66213 1336 bp downstream
Tssr66214 transcription start site region 66214 1304 bp downstream
Tssr66215 transcription start site region 66215 1274 bp downstream
Tssr66216 transcription start site region 66216 1227 bp downstream
Tssr66217 transcription start site region 66217 1155 bp downstream
Tssr66218 transcription start site region 66218 1101 bp downstream
Tssr66219 transcription start site region 66219 1059 bp downstream
Tssr66220 transcription start site region 66220 1025 bp downstream
Tssr66221 transcription start site region 66221 1006 bp downstream
Tssr66222 transcription start site region 66222 953 bp downstream
Tssr66223 transcription start site region 66223 886 bp downstream
Tssr66224 transcription start site region 66224 863 bp downstream
Tssr66225 transcription start site region 66225 843 bp downstream
Tssr66226 transcription start site region 66226 830 bp downstream
Tssr66227 transcription start site region 66227 789 bp downstream
Tssr66228 transcription start site region 66228 786 bp downstream
Tssr66229 transcription start site region 66229 773 bp downstream
Tssr66230 transcription start site region 66230 753 bp downstream
Tssr66231 transcription start site region 66231 718 bp downstream
Tssr66232 transcription start site region 66232 706 bp downstream
Tssr66233 transcription start site region 66233 684 bp downstream
Tssr66234 transcription start site region 66234 654 bp downstream
Tssr66235 transcription start site region 66235 634 bp downstream
Tssr66236 transcription start site region 66236 607 bp downstream
Tssr66237 transcription start site region 66237 586 bp downstream
Tssr66238 transcription start site region 66238 567 bp downstream
Tssr66239 transcription start site region 66239 516 bp downstream
Tssr66240 transcription start site region 66240 435 bp downstream
Tssr66241 transcription start site region 66241 423 bp downstream
Tssr66242 transcription start site region 66242 343 bp downstream
Tssr66243 transcription start site region 66243 329 bp downstream
Tssr66244 transcription start site region 66244 278 bp downstream
Tssr66245 transcription start site region 66245 216 bp downstream
Tssr66246 transcription start site region 66246 188 bp downstream
Tssr66247 transcription start site region 66247 141 bp downstream
Tssr66248 transcription start site region 66248 100 bp downstream
Tssr66249 transcription start site region 66249 77 bp downstream
Tssr66250 transcription start site region 66250 58 bp downstream
Tssr66251 transcription start site region 66251 33 bp downstream
Tssr66252 transcription start site region 66252 2 bp downstream
Tssr66253 transcription start site region 66253 within coordinates
Tssr66254 transcription start site region 66254 30 bp upstream
Tssr66255 transcription start site region 66255 90 bp upstream
Tssr66256 transcription start site region 66256 118 bp upstream
Tssr66257 transcription start site region 66257 154 bp upstream
Tssr66258 transcription start site region 66258 184 bp upstream
Tssr66259 transcription start site region 66259 213 bp upstream
Tssr66260 transcription start site region 66260 329 bp upstream
Tssr66261 transcription start site region 66261 355 bp upstream
Tssr66262 transcription start site region 66262 372 bp upstream
Tssr66263 transcription start site region 66263 378 bp upstream
Tssr66264 transcription start site region 66264 388 bp upstream
Tssr66265 transcription start site region 66265 417 bp upstream
Tssr66266 transcription start site region 66266 460 bp upstream
Tssr66267 transcription start site region 66267 488 bp upstream
Tssr66268 transcription start site region 66268 517 bp upstream
Tssr66269 transcription start site region 66269 537 bp upstream
Tssr66270 transcription start site region 66270 588 bp upstream
Tssr66271 transcription start site region 66271 606 bp upstream
Tssr66272 transcription start site region 66272 672 bp upstream
Tssr66273 transcription start site region 66273 684 bp upstream
Tssr66274 transcription start site region 66274 699 bp upstream
Tssr66275 transcription start site region 66275 707 bp upstream
Tssr66276 transcription start site region 66276 736 bp upstream
Tssr66277 transcription start site region 66277 744 bp upstream
Tssr66278 transcription start site region 66278 776 bp upstream
Tssr66279 transcription start site region 66279 823 bp upstream
Tssr66280 transcription start site region 66280 862 bp upstream
Tssr66281 transcription start site region 66281 893 bp upstream
Tssr66282 transcription start site region 66282 919 bp upstream
Tssr66283 transcription start site region 66283 933 bp upstream
Tssr66284 transcription start site region 66284 950 bp upstream
Tssr66285 transcription start site region 66285 965 bp upstream
Tssr66286 transcription start site region 66286 1002 bp upstream
Tssr66287 transcription start site region 66287 1020 bp upstream
Tssr66288 transcription start site region 66288 1056 bp upstream
Tssr66289 transcription start site region 66289 1104 bp upstream
Tssr66290 transcription start site region 66290 1165 bp upstream
Tssr66291 transcription start site region 66291 1194 bp upstream
Tssr66292 transcription start site region 66292 1232 bp upstream
Tssr66293 transcription start site region 66293 1250 bp upstream
Tssr66294 transcription start site region 66294 1271 bp upstream
Tssr66295 transcription start site region 66295 1556 bp upstream
Tssr66296 transcription start site region 66296 1689 bp upstream
Tssr66297 transcription start site region 66297 1732 bp upstream
Tssr66298 transcription start site region 66298 1757 bp upstream
Tssr66299 transcription start site region 66299 1826 bp upstream
Tssr66300 transcription start site region 66300 1833 bp upstream
Tssr66301 transcription start site region 66301 1857 bp upstream
Tssr66302 transcription start site region 66302 1871 bp upstream
Tssr66303 transcription start site region 66303 1912 bp upstream
Tssr66304 transcription start site region 66304 1920 bp upstream
Tssr66305 transcription start site region 66305 1930 bp upstream
Tssr66306 transcription start site region 66306 1964 bp upstream
Tssr72198 transcription start site region 72198 1892 bp upstream
Tssr72199 transcription start site region 72199 193 bp upstream
Tssr72200 transcription start site region 72200 753 bp downstream
Tssr72201 transcription start site region 72201 1254 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory