rs261908023 SNP Detail

Summary

• ID
  rs261908023
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:35026662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGTTTAG GCAATGTTAA
  GAGATCAAGT TTAAAGAGTT TATGACAGGT AAACACTTTA CCAACTGCAT TCCTTGTGTC
  GTTGTCCGTC CTCCCCCCCC CCCGCCGCCC CCCCCCCCAG TACTGGGATT GTAGGCAGCT
  CCGTCTGTCA CTGAACCACA CCCCCAGTCC CTAATTTACT TTTATGACTT CTGCCTGCAT
  M
  CCTCTCTTTA TCTCCATCAT CACCTTGAAA TCTTTGGGGA CTGGCCCAAC TCCTGGCTTG
  CTGTAGTGGG GCTGGGGGAT CGGATGTGTT GAGGAGGGTG AAATGAGTGG GAGGTGAGGC
  CCAGGGTTCA GTAAGCAGCC AAAGATGCCT TCCCCTATGC AACAGGACAG GCCATAGGGG
  ATGCTCAGAG TAGGGCAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322899092	CHEV_9_34922951	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261908023					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35026662 () rs orientation: forward

Symbol	Name	Function Class
4930581F22Rik	RIKEN cDNA 4930581F22 gene	1362 bp upstream
Cpgi21550	CpG island 21550	887 bp proximal
Gm57537	predicted gene, 57537	1834 bp downstream
Rr676432	regulatory region 676432	872 bp proximal
Rr676433	regulatory region 676433	1383 bp proximal
Rr676434	regulatory region 676434	1497 bp proximal
Rr676435	regulatory region 676435	1679 bp proximal
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	Intron
Tssr84325	transcription start site region 84325	1374 bp upstream
Tssr84326	transcription start site region 84326	1564 bp upstream
Tssr88717	transcription start site region 88717	1394 bp downstream
Tssr88718	transcription start site region 88718	1438 bp downstream
Tssr88719	transcription start site region 88719	1609 bp downstream