rs261916780 SNP Detail

Summary

• ID
  rs261916780
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135398346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAGAGC CCTGTAATCA
  ACCTTAAAGC TATATCATTA AATTGTAGAG ACCGTTTTGC CATCTAGAGT TCAGAGGCTT
  CCTATAGATG GAAGACAACG ATGGTTGTTA TTATTTATGG GACATTAGAA ATTGTAACCT
  ACGGGCCTGG GAAATGACTC AACAGAGTGG TCGTTGGGAT CTTTAGCATT CCTGCAGGTG
  K
  GGGTATCTGT AACCTCAGCG GACAGTTGGA CCTGGAACTC ATTGGATAAC TAACAAAGCC
  AAGCGCTGAG TGACAGAAAG TGACAAACAC AGACCTCTGT GAGAGAGAGT GGGGGTGGGG
  GGGACAGAGG GAGGGGGAGG GGGAGAGGGC AAGAACTGTG TCCTTGTTAC TATTTAGCAC
  ATTGCTATAT AGTATATAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359841240	MGP_WTSI_3_135355549	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261916780					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359841240	MGP_WTSI_3_135355549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135398346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	605 bp distal
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	1038 bp upstream
Rr585767	regulatory region 585767	549 bp distal
Rr585768	regulatory region 585768	445 bp proximal
Tssr35825	transcription start site region 35825	1329 bp upstream
Tssr35826	transcription start site region 35826	1314 bp upstream
Tssr35827	transcription start site region 35827	1272 bp upstream
Tssr35828	transcription start site region 35828	1215 bp upstream
Tssr35829	transcription start site region 35829	1178 bp upstream
Tssr35830	transcription start site region 35830	1168 bp upstream
Tssr35831	transcription start site region 35831	1106 bp upstream
Tssr35832	transcription start site region 35832	1074 bp upstream
Tssr35833	transcription start site region 35833	1021 bp upstream
Tssr35834	transcription start site region 35834	604 bp upstream