rs261916974 SNP Detail

Summary

• ID
  rs261916974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19194354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATACATG GTGGCTCACA
  ACCATCTGTA ACTGCAGGTC TATGGGACCT GACACCCTCT TCTGGCTTCC CCAGTGACTA
  TGTGCATGTA CACACACACA CACACACACA CACACACACA CACACACACG AGGCAGAACA
  CCCAAAAACA TAAGTAAACA TAAAAGCTAT AAAAGTAAAG AAAAGGCCCA AAGTGAGAGT
  R
  AGTGTGGCAG AGCTCAGATT ATTTATTATA CTTGAACAAT TTATTAATTT TGGGGAGCAG
  GGCATGTGTG TGATGGTGAG GGAACAGGTT TTGGAAGTCA ACTGTCTCCT CTCTCTGTGG
  GTCCCCAGGA TCAAACTTGG GTCACCAGCC TCAAAGGCAA GAGCCTTCAC CCCACCTCCG
  CAGCCAACCC TATGCATTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370749854	MGP_WTSI_7_20045778	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261916974					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370749854	MGP_WTSI_7_20045778	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19194354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	1356 bp distal
Gm23099	predicted gene, 23099	368 bp downstream
Mark4	MAP/microtubule affinity regulating kinase 4	1608 bp upstream
Rr400149	regulatory region 400149	1372 bp downstream
Rr643146	regulatory region 643146	1619 bp distal
Rr643147	regulatory region 643147	1118 bp distal
Rr643148	regulatory region 643148	1103 bp proximal
Rr643149	regulatory region 643149	1235 bp proximal
Tssr64858	transcription start site region 64858	1494 bp downstream
Tssr70918	transcription start site region 70918	1744 bp upstream
Tssr70919	transcription start site region 70919	1690 bp upstream
Tssr70920	transcription start site region 70920	1653 bp upstream
Tssr70921	transcription start site region 70921	1629 bp upstream
Tssr70922	transcription start site region 70922	1573 bp upstream
Tssr70923	transcription start site region 70923	1176 bp upstream