rs261923186 SNP Detail

Summary

• ID
  rs261923186
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:36193947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGTGTGC ATGGGTGCTT
  TGTCTGCATG TGTATTGGTA TGGGACATGC ATGCCTGTGC ACCTTGTGCA CCCATGGGTC
  TCTGTACTCA CTTCTATTTG CTGCAAAGAA AACTTCTCTG ATTAAGGCTG AGAGTAGCCT
  TTGCCTGTGG GTATGAACAC AGATGATAAT TAGTATTCTT TTTTGAGATA TGGTCTGACT
  R
  TGTAGCCCAG GCTGGCTTGG AACGTGCTAT GTAGGGAGGG CTGGCTTTCA AGTCACAATT
  CTCCTGCTCC CGTCTGTCAT TCTGTCTGTC ATTCTCTCTT TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TTTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss374264567	MGP_WTSI_8_36789847	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs261923186					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374264567	MGP_WTSI_8_36789847	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:36193947 () rs orientation: forward

Symbol	Name	Function Class
Gm35021	predicted gene, 35021	within coordinates
Gm40492	predicted gene, 40492	890 bp downstream
Rr662255	regulatory region 662255	1339 bp distal
Rr662256	regulatory region 662256	1200 bp distal