rs261930294 SNP Detail

Summary

• ID
  rs261930294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70117525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAGCTTA GATTTGTAGA
  GGCTGCAAGA CCCACAGGGT GGCACCGTTC CTGGGGCTGG GCTTGACTAC AAAGGAAACT
  GGGAGCTGAG TTCCAGCAGT TGTCTCTCCC TGCTTCCTGC TTGCTGGAAC AGCGGCGTGA
  TGGCTGCCTC TGGTGTTGGC TGCCTCTGGT ATTGGCCGCC ATGCCTCTTC CCCCTTGATC
  R
  GATTGTATCC CCTTCATCCT CTCAGACAAG CCCTTCCACC AGTTCCTTTT GTCAGGGATG
  TTTGTCACAA TAGAAAAAGT AACTAATTGT GTGTGTGTGT GTGTGTGTGT GTGTGACACA
  CACACACACA GAGAGGGGGG GAGAGGGAGA GAGAGAGGGA GAGAGAAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377971500	MGP_WTSI_9_70058050	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	G	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261930294					SNP	G	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	G	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377971500	MGP_WTSI_9_70058050	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70117525 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21999	CpG island 21999	1831 bp distal
Gm26849	predicted gene, 26849	within coordinates
Gm68934	predicted gene, 68934	1085 bp downstream
Myo1e	myosin IE	within coordinates
Rr206677	regulatory region 206677	724 bp distal
Rr206678	regulatory region 206678	324 bp distal
Tssr90403	transcription start site region 90403	1478 bp downstream