rs261936470 SNP Detail

Summary

• ID
  rs261936470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152181150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCTCCTGT GTGGTGTCTG GAGCCCAGCC
  CCTGGGGTGG AGAAGCATGG GGTTAAGGCC CAAAAGCTGG GCTTCCAAGT CTGTACTCTG
  GTCTGAGTAG CCCAGGCTGG GAGTGGCTGG GGTTCCGCGG GGTGTCACCA GCCCAGCCCC
  Y
  TTCACCCCTC CCAGGCGCAA CTGCACAATG GCAGGAAGCG GGGCTCAGTG CTTTGTCCCT
  AGCGCGGCGC AGACCGTAGC TTCCTCCGGC CACCATGGGG ACAGGACCGG GCGTCTCCGG
  GCGCCGAGCA GCAGCCAGGC CCAGCTCTGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321433894	CHEV_4_151470802	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261936470					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152181150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15387	CpG island 15387	within coordinates
Plekhg5	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	within coordinates
Rr377434	regulatory region 377434	121 bp upstream
Tssr40496	transcription start site region 40496	5 bp upstream
Tssr40497	transcription start site region 40497	43 bp upstream