rs261944522 SNP Detail

Summary

• ID
  rs261944522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88382203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagagaagg acagaaaggg ggagagagag
  agACCGGCTG GAAACATGTG GGAACAGATA GTGACAGAAC TGGGGTGGCA AGCTGTCCTT
  TTGTAGAACA CCTGAAACTG GCCCGTGCAG GTGATGGCAC AGGTACCTAA GAGGAGCCTA
  R
  TGGAATCACC TGTAAGCCAA CACACACACA Ggatagatag ataatagaca gatgagggat
  gggtagatga cagatatgta agacagatat gtagatgatg catagattaa tacatattat
  atttatatta tatataataa ttaatatatt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319830658	CHEV_1_90351056	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261944522					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88382203 () rs orientation: forward

Symbol	Name	Function Class
Gm29538	predicted gene 29538	within coordinates
Tssr7971	transcription start site region 7971	1079 bp downstream