rs261946538 SNP Detail

Summary

• ID
  rs261946538
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174313671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTAGTT CTAGTAGTTT
  GTCCTTTCTG GGACACAGCA GGTACTCAGA TATGATCTAC TATGTAAAAC TTCTTTTACA
  ATTACCCTCA GTAATCAGGA TTGGCATTTG TAGATTAAAA GGCACCATAA AGCTATACTA
  TTAAAACAGT GTGGCAACAT TGGCCAAGTG AGTGAAGGAG CTCAGATCAT CTGGAAGTGG
  W
  TTCGGATGTA AGTCAACAAT AACTATGACA AGATGACATT GTAGAATAGA GCACAATAAA
  TCAGTCAGAA AGGAGGGCTG GAACAAGGCG TAAACCAGTT ATTTAGGTAG AAAGCTCTGT
  TGTTCTTGTG TGTGGCACCA TGAACCTGGG TGGTATAATT CCCAACACCC CACTGACTCT
  GATCCTGTTT CCCACTATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356690931	MGP_WTSI_2_174297379	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261946538					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356690931	MGP_WTSI_2_174297379	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174313671 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	440 bp proximal
Gm38546	predicted gene, 38546	1211 bp upstream
Prelid3b	PRELI domain containing 3B	within coordinates
Rr397557	regulatory region 397557	999 bp upstream
Rr572131	regulatory region 572131	951 bp distal
Rr572132	regulatory region 572132	562 bp distal
Rr572133	regulatory region 572133	85 bp proximal
Rr572134	regulatory region 572134	724 bp proximal
Rr572135	regulatory region 572135	1010 bp proximal
Rr572136	regulatory region 572136	1119 bp proximal
Rr572137	regulatory region 572137	1193 bp proximal
Rr572138	regulatory region 572138	1318 bp proximal
Tssr28035	transcription start site region 28035	1000 bp downstream
Tssr28036	transcription start site region 28036	1071 bp downstream