rs261948898 SNP Detail

Summary

• ID
  rs261948898
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87005345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTGGAA GCATTGTCTT
  TACGTGGCCA TAATTTCTTA TTTCTTTTGT GTAAATACTG GGAAATGGGA CTATTAGGAG
  AAGTTGCTAA AATCAACTGG GTGGCGGCAT AGCCTTTAAT CCCATCACTT GGGAGGTGGG
  CCGGGGGTGG TGGTGAATCT CTGAGTTTGA GACCTAGTCT GCAGAGTGAG TTTCAGGAAC
  S
  CATGGCTTGA AAAATCACAC CAACACACAA AAGGCAAAAA CAGTTTGATA AAATCTTTTC
  CATAGTCCTC TTAGTGATAT TGAATATTTT TCATGTGCTT ATTTGCAACT GATATATGTT
  TTTTAATGTC TTAAAGTCTT CCTGTCCATG CATGGTACAT GGTATACGTA CATACGTGCA
  TACACAAACT GCAGACACAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772695	CHEV_11_86928021	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261948898					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87005345 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mir301	microRNA 301			1430 bp downstream
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103909	transcription start site region 103909			1439 bp downstream