rs261951935 SNP Detail

Summary

• ID
  rs261951935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59699552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCTTCCCA GCCCGTAACA CCAACTGTCA
  CTTATCCTCT GGAAATCCTC CTGGGCACTG GGCAACAGGC TTCTCTGACG GGATTGCATA
  TGGCGTCTGA ATTCCGGTGA GGAAGGAGCC TAGGTCTTCT GTTACTCTCC CAATCCCAAT
  R
  TCTACCACAT TCTTCTACCA CAGGAGCCGG CTTCTGGGAG TGTGCCTAAC CACCCTTTCC
  TAGTAACCTT TCGAGCTGAA GACAGTCTCC TCAGCGTCAT ACTTTGAGAG GCAGGCTGTG
  CATGTACGAG ATTTGCTCCC GCTGTCTGAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323699336	CHEV_11_59622228	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261951935					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59699552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2968	CpG island 2968	810 bp proximal
Flcn	folliculin	within coordinates
Gm16062	predicted gene 16062	1354 bp upstream
Rr448261	regulatory region 448261	342 bp distal
Rr448262	regulatory region 448262	within coordinates
Rr448263	regulatory region 448263	852 bp proximal
Rr448264	regulatory region 448264	1136 bp proximal
Rr448265	regulatory region 448265	1280 bp proximal
Tssr101863	transcription start site region 101863	1381 bp upstream
Tssr101864	transcription start site region 101864	1561 bp upstream
Tssr101865	transcription start site region 101865	1583 bp upstream
Tssr108246	transcription start site region 108246	1048 bp downstream
Tssr108247	transcription start site region 108247	1300 bp downstream