rs261960210 SNP Detail

Summary

• ID
  rs261960210
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116741457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCACCTGA AAAGTCTTTA
  TACAAATTTG GGTTCAGATT ATCATATAGA CCTGAAGGTA AATAACATAT ATGAACAAAT
  TACACCAACT TTCATAGGTT TTTAATTATT AAGAAGTGAA GGCAATGTTG AGTCATTCTG
  CTGACAGCTT TAGGCTGTAT GTAATGGCTG TACATGTTTC CTTATTAAGT CAGGAGGCCA
  S
  AAATTAGGTT ACCAATCTGT TTAATTTCAA ACAAAAAAGT CAGCACTATA AACAAAAATG
  AAATTTTACC TCAAATATCC AATCCAATAA TGAAATCTGA AGTCGCTCAC CTCACTAAAT
  TACAAGAAAT TTGAATAACA GCAACAAAAT GGCACATAAA ATGAAGTTTG CCACCTGAGG
  CAGATTAAAA CAAGTAAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384861291	MGP_WTSI_11_116711945	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261960210					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384861291	MGP_WTSI_11_116711945	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116741457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4197	CpG island 4197	1335 bp proximal
Mettl23	methyltransferase like 23	891 bp downstream
Mfsd11	major facilitator superfamily domain containing 11	1809 bp upstream
Rr246190	regulatory region 246190	856 bp distal
Rr246191	regulatory region 246191	within coordinates
Srsf2	serine and arginine-rich splicing factor 2	within coordinates
Tssr106000	transcription start site region 106000	1553 bp upstream
Tssr106001	transcription start site region 106001	1854 bp upstream
Tssr111999	transcription start site region 111999	within coordinates
Tssr112000	transcription start site region 112000	280 bp downstream
Tssr112001	transcription start site region 112001	559 bp downstream
Tssr112002	transcription start site region 112002	627 bp downstream
Tssr112003	transcription start site region 112003	648 bp downstream
Tssr112004	transcription start site region 112004	813 bp downstream
Tssr112005	transcription start site region 112005	1482 bp downstream
Tssr112006	transcription start site region 112006	1527 bp downstream
Tssr112007	transcription start site region 112007	1571 bp downstream
Tssr112008	transcription start site region 112008	1692 bp downstream
Tssr112009	transcription start site region 112009	1797 bp downstream