rs261963982 SNP Detail

Summary

• ID
  rs261963982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70440822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTATAT TGTCGATCCA
  CGGCTCCCCC CACCTGGCCT GCTAGTGTCC CATCAACTGC TGGCCCATCA GTGTCCTTTT
  TTCCTCGCTG TTCACTCACC CTTGTCCCCC GGGAGGATGA GCCTATATGG GTTCGGAGGT
  GACCAGGGAT GAAATCATCC AGGCTGAGCC CAGCAGGGAG GCCTTGCATG CTTGGGTCAA
  R
  GTTGGAGGAC GCAGGATGTG CCAGCTGCTC CTTCGTGTGT ACTCTGCAGA GAAGGAGGAA
  GGAAGGGAAA GCCCTGCTCG GCTGGACTGC CTGGGACCTC TTGACTCAAC CCACTGGTGG
  GGGAGGAAGG TAGGTTTGTG GGAGGGAATT ATGGCCAGCT GGGTGGGAGC TCAAGGACCC
  AGGAAACAGG CAGCTCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391461193	MGP_WTSI_14_70603180	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261963982					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391461193	MGP_WTSI_14_70603180	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70440822 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm26908	predicted gene, 26908			46 bp upstream
Gm49417	predicted gene, 49417			1951 bp upstream
Rr494880	regulatory region 494880			736 bp proximal
Rr494881	regulatory region 494881			1240 bp proximal
Rr494882	regulatory region 494882			1864 bp proximal
Rr494883	regulatory region 494883			1962 bp proximal
Sorbs3	sorbin and SH3 domain containing 3			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			21 bp upstream
Tssr126404	transcription start site region 126404			1798 bp upstream
Tssr126405	transcription start site region 126405			1852 bp upstream
Tssr126406	transcription start site region 126406			1871 bp upstream
Tssr129550	transcription start site region 129550			35 bp downstream
Tssr129551	transcription start site region 129551			82 bp downstream
Tssr129552	transcription start site region 129552			94 bp downstream