rs261970666 SNP Detail

Summary

• ID
  rs261970666
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120633944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTACGT GCACCGGGTG
  GAAACACGAC CTGGAGTCGT TGGCGTTCCG GGCTGGGAAG GGCCGCGGGG GACGTGAGAA
  GGCCGCGCGC CTGCCGCTCC TCCCCCGCCC CCCCTCCCGC GCCATCTCCC CCTCCCTCTG
  CCTCGGCCCC GAAGGGGGCT GCACGGGCGA CTTGGCGGCG ATGGCTCGAG CTCCGGCGGC
  K
  ACGACGGTGG CCGGAGGCGG CGGCTCCTCC TCCTCCTCCT CCTGGGCTTG GGCCCGGCGG
  TGATCCGAGC TGGCGGCCGC GGCCCCCCGA TGAGACTGTT GGCGGGCTGG CTGTGCCTGA
  GCCTGGCGTC CGTGTGGCTG GCGCGGAGGA TGTGGACGCT GCGGAGCCCG CTCTCCCGCT
  CCCTGTACGT GAACATGACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372947410	MGP_WTSI_7_128178235	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261970666					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372947410	MGP_WTSI_7_128178235	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120633944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19654	CpG island 19654	within coordinates
Gm9905	predicted gene 9905	within coordinates
Gm72635	predicted gene, 72635	1517 bp downstream
Mettl9	methyltransferase like 9	within coordinates
Rr166622	regulatory region 166622	within coordinates
Rr168961	regulatory region 168961	1544 bp distal
Rr400600	regulatory region 400600	35 bp downstream
Tssr68810	transcription start site region 68810	1954 bp downstream
Tssr68811	transcription start site region 68811	1934 bp downstream
Tssr68812	transcription start site region 68812	1919 bp downstream
Tssr68813	transcription start site region 68813	300 bp downstream
Tssr68814	transcription start site region 68814	192 bp downstream
Tssr68815	transcription start site region 68815	141 bp downstream
Tssr68816	transcription start site region 68816	3 bp downstream
Tssr68817	transcription start site region 68817	18 bp upstream
Tssr68818	transcription start site region 68818	61 bp upstream
Tssr68819	transcription start site region 68819	839 bp upstream
Tssr68820	transcription start site region 68820	898 bp upstream
Tssr68821	transcription start site region 68821	1945 bp upstream
Tssr74531	transcription start site region 74531	271 bp upstream