rs261974828 SNP Detail

Summary

• ID
  rs261974828
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:34419414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCGAGTAG ACAAAGCTGA GCATTCTACT TACAAAAGTC
  TCGGGAAAGT CCTCAAAACT TATGCAATAA CCAGAGGCAG GCGGACGCGC GTGGACCCAG
  C
  CCCGCGCCCT CCGGACGCCC GCGTCCCGTG CTACTCCCCC CAGCCCCGGC CCGTGCGCCC
  CGCGCCCCCC AGCCAGTCCC CCTCAGTACC TCCTCCTCC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322573969	CHEV_8_35039858	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261974828					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34419414 () rs orientation: forward

Symbol	Name	Function Class
9530006C21Rik	RIKEN cDNA 9530006C21 gene	617 bp upstream
Cpgi20240	CpG island 20240	within coordinates
Gm64370	predicted gene, 64370	1955 bp upstream
Rbpms	RNA binding protein gene with multiple splicing	Intron
Rr661901	regulatory region 661901	1571 bp distal
Rr661902	regulatory region 661902	within coordinates
Rr661903	regulatory region 661903	409 bp proximal
Rr661904	regulatory region 661904	1465 bp proximal
Tssr80880	transcription start site region 80880	1912 bp upstream
Tssr80881	transcription start site region 80881	412 bp downstream
Tssr80882	transcription start site region 80882	547 bp downstream
Tssr80883	transcription start site region 80883	592 bp downstream