rs261990229 SNP Detail

Summary

• ID
  rs261990229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69300564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCGCAGC GGAAGCGGTG
  TGTGTAAGGG GGGGGGGGTC CTTCGGGAGG GAGAGGAGGG CGGGGCCCAA CAGGCAGTGA
  CATCACCCCT GTCCCACTCT CACCGCCTAC TCCCTTAAAG AACACAGAAC CCGTTTCACT
  TCCTCCTTCA CGCCACCCCC CTCCCCTTTA CTCCTTTCCC GTCGAAGCTG AACCCACAAC
  R
  GGCACAGTAC TCCCCTTTCC TAGTCACGTT CCCTTTAATC CTAGCTTTGC CTTCTCAAAT
  CTTAGAGCCC AGAAGCTGCT TCCCTGCGCA TACCCCAGGT CCCGGCAGGT AGGGAGCCTA
  CTCTGCTCCC GGGATCGGTC CATTGAGAGT CTAGAGTACA AAGACCGGCG AGAGGCTAGT
  GTCGAGTACA AAGCCGCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383783472	MGP_WTSI_11_69223240	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261990229					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383783472	MGP_WTSI_11_69223240	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69300564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	within coordinates
Gm72923	predicted gene, 72923	1580 bp upstream
Gm72933	predicted gene, 72933	16 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	136 bp upstream
Rr402670	regulatory region 402670	842 bp downstream
Rr402671	regulatory region 402671	78 bp downstream
Tssr3543	transcription start site region 3543	1014 bp upstream
Tssr102456	transcription start site region 102456	794 bp downstream
Tssr102457	transcription start site region 102457	434 bp downstream
Tssr102458	transcription start site region 102458	49 bp downstream
Tssr102459	transcription start site region 102459	18 bp downstream
Tssr102460	transcription start site region 102460	within coordinates
Tssr102461	transcription start site region 102461	32 bp upstream
Tssr102462	transcription start site region 102462	60 bp upstream
Tssr102463	transcription start site region 102463	813 bp upstream
Tssr102464	transcription start site region 102464	1087 bp upstream
Tssr102465	transcription start site region 102465	1206 bp upstream
Tssr102466	transcription start site region 102466	1363 bp upstream
Tssr102467	transcription start site region 102467	1581 bp upstream
Tssr102468	transcription start site region 102468	1617 bp upstream
Tssr102469	transcription start site region 102469	1659 bp upstream
Tssr108664	transcription start site region 108664	1907 bp upstream
Tssr108665	transcription start site region 108665	1176 bp upstream
Tssr108666	transcription start site region 108666	578 bp upstream
Tssr108667	transcription start site region 108667	327 bp upstream
Tssr108668	transcription start site region 108668	316 bp upstream
Tssr108669	transcription start site region 108669	293 bp upstream
Tssr108670	transcription start site region 108670	169 bp upstream
Tssr108671	transcription start site region 108671	146 bp downstream
Tssr108672	transcription start site region 108672	630 bp downstream
Tssr108673	transcription start site region 108673	658 bp downstream
Tssr108674	transcription start site region 108674	702 bp downstream
Tssr108675	transcription start site region 108675	869 bp downstream
Tssr108676	transcription start site region 108676	914 bp downstream
Tssr108677	transcription start site region 108677	958 bp downstream
Tssr108678	transcription start site region 108678	974 bp downstream
Tssr108679	transcription start site region 108679	1273 bp downstream
Tssr108680	transcription start site region 108680	1927 bp downstream
Tssr108681	transcription start site region 108681	1958 bp downstream