rs261994920 SNP Detail

Summary

• ID
  rs261994920
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74410462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGAAGG CATAGACATA
  GTATCTACTT TGTAAGATAA TCCCCTAAAT TCTAAGATCT TCAGTTACAG CTTTGTAAAC
  TTAAAAGAAT AGGAGAGAGC TAAACTTTAG TGTGCCATGT ATCGCCTCAC CAATGTGGAA
  GAAAGTAAAC AGACATTTCA CCAGTTTTTA TTTGGAAAAT TAGCCATTTT ATTTCCCAGC
  S
  TTGGTAGTTT CTAAGAACAT AAAACTCGTG CTGCCTCTTG TCTCAGATCT TTCCTAAAGG
  GAACAGGAAA GTTTTGTTTG TTTTTGTTGT TGTTGTTGTG TTTTGTTTTG TTTTTGACTC
  TTGCTAATAC TTGTCCTAGG GTTTTTCATT GAGCTATCAG GGAGTTTAAA AATAAAACAG
  GACAGAGAGA AGAGAGCTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354483047	MGP_WTSI_2_74418175	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261994920					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354483047	MGP_WTSI_2_74418175	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74410462 () rs orientation: forward

Symbol	Name	Function Class
4930445N08Rik	RIKEN cDNA 4930445N08 gene	within coordinates
Cpgi11782	CpG island 11782	829 bp distal
Lnpk	lunapark, ER junction formation factor	683 bp upstream
Rr559317	regulatory region 559317	1906 bp distal
Rr559318	regulatory region 559318	1767 bp distal
Rr559319	regulatory region 559319	1181 bp distal
Rr559320	regulatory region 559320	1064 bp distal
Rr559321	regulatory region 559321	429 bp distal
Tssr18388	transcription start site region 18388	1070 bp downstream
Tssr24610	transcription start site region 24610	1164 bp upstream
Tssr24611	transcription start site region 24611	701 bp upstream
Tssr24612	transcription start site region 24612	668 bp upstream
Tssr24613	transcription start site region 24613	654 bp upstream