rs261999554 SNP Detail

Summary

• ID
  rs261999554
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66204294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAACAT TACAAGGACA
  TCGGTGTCCA TAGAAAATGT AGCTATTACT GATAATTCTT TCTTTTTATT TTTCTTTATA
  AAGAAAACAA AAAGAAGATT TGGGGGTGGG GTGGGGGGAA CATTCCTCCA AGTTTCTGTT
  GACTCTGTTT TTCTGGTTAG TTATCTTCCC AGACTTGGCA TTGAATCAGG TTAGGCTAAA
  K
  AAAGCCTTAG TGAGGACTCA TTTCAGATTC ATCTTTCCCA GACGGAAGAA ACTAAGGCCC
  AAGGGCAGAG TGGTTTGTCT AAAGGCACTG GGTGCCTCAG GGAACAGCTG GGACTGTAGC
  CAGCCTTAGC CCAGTTCTGA CCATTCCTAG ACATTTCCTG TAGGCTGCCT TTTGGGAAAG
  TACCAAATCA CCATAGTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367230	MGP_WTSI_14_66585682	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261999554					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367230	MGP_WTSI_14_66585682	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66204294 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	1799 bp upstream
Cpgi6638	CpG island 6638	1623 bp proximal
Rr290025	regulatory region 290025	1307 bp proximal
Rr296014	regulatory region 296014	980 bp distal
Rr297400	regulatory region 297400	1306 bp proximal
Tssr126237	transcription start site region 126237	1646 bp upstream
Tssr126238	transcription start site region 126238	1666 bp upstream
Tssr126239	transcription start site region 126239	1688 bp upstream
Tssr126240	transcription start site region 126240	1699 bp upstream
Tssr126241	transcription start site region 126241	1716 bp upstream
Tssr126242	transcription start site region 126242	1749 bp upstream
Tssr126243	transcription start site region 126243	1758 bp upstream
Tssr126244	transcription start site region 126244	1768 bp upstream
Tssr126245	transcription start site region 126245	1788 bp upstream
Tssr126246	transcription start site region 126246	1806 bp upstream