rs262006180 SNP Detail

Summary

• ID
  rs262006180
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6725891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAATGGG CATCTGTCCT
  CAAGGTGAAC CCTTTCTCTA TCCCACCAGT GGCACTGCAC TGTTTTGCAG GTCATTTCAA
  GGTCTCTACA GGCTATAGAA AAGGGTAATA TACTTGTGAT TACATGAGAA GTCATGAAAA
  GGTAGCATTG AAAGAGTTAG CTCCTGAAGT ACAAGACTAA GAAATACTGT TCCTTAAAGA
  W
  GCACCAACTC CGCCCAGAGA TCACATTGCT TAGAACGTGA CCTCATAGGA GCAATCAGGA
  GACCATAAAA AGCTGGGCAG CTTTCCTGCC CTCCTTCTTG AGTCCCACCT GTCCCAGCAG
  GCGGGAATTC TGGGAGGAGC CCTGAGGCAC AGCCAGAACA CCAGGGCCGG CAGCACCAGC
  TGCTCTCAGC CTTGCTGCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352985678	MGP_WTSI_2_6642126	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262006180					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352985678	MGP_WTSI_2_6642126	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6725891 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	within coordinates
Rr56941	regulatory region 56941	within coordinates
Tssr16031	transcription start site region 16031	87 bp upstream
Tssr22455	transcription start site region 22455	240 bp upstream
Tssr22456	transcription start site region 22456	6 bp upstream
Tssr22457	transcription start site region 22457	526 bp downstream
Tssr22458	transcription start site region 22458	557 bp downstream
Tssr22459	transcription start site region 22459	570 bp downstream
Tssr22460	transcription start site region 22460	731 bp downstream
Tssr22461	transcription start site region 22461	810 bp downstream
Tssr22462	transcription start site region 22462	910 bp downstream
Tssr22463	transcription start site region 22463	1090 bp downstream
Tssr22464	transcription start site region 22464	1107 bp downstream
Tssr22465	transcription start site region 22465	1157 bp downstream
Tssr22466	transcription start site region 22466	1170 bp downstream