rs262011434 SNP Detail

Summary

• ID
  rs262011434
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:92276023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAGAGG TGATGCTATG
  GATGCGCTCA TGAGGTGAGT ATCTGGCAGG CTCTGTTCTA AGCCAGACAC TCCTGTTAGG
  TGTTCAGGTG GATTTTAAAA ATTTATTTCA ATTAATTAAT CAAGCATGGT TTTGTGTGTG
  TGCGTGTGTG CGTGGTCCGC CTCTCCCTCC TTCTCCCCTT TCCCCCCCCC CCCCGCCCCC
  S
  CCCCATGCTG TGGTGCACAG GTGGAGATCA AAAGACGTCT TTTTCTCCTT CTCCGTGTGA
  GTTCTGGAGC TTGAGCCGGG GACATGAGGT GTGACAAGTG TCTCCCTTGC TCAGCCATCT
  AGGTGGTTCC CAGGCTAGAA TGCTCCCGGT GGTATCTGGG AATATGCCAT CATTCTAGAA
  TCTTTCTGGG CGGGAGAGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss397348613	MGP_WTSI_16_92479380	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs262011434					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397348613	MGP_WTSI_16_92479380	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:92276023 () rs orientation: forward

Symbol	Name	Function Class
2410124H12Rik	RIKEN cDNA 2410124H12 gene	within coordinates
Cpgi8471	CpG island 8471	181 bp distal
Rr319727	regulatory region 319727	423 bp distal
Rr325587	regulatory region 325587	23 bp distal