rs262022333 SNP Detail

Summary

• ID
  rs262022333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29579229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTCTGCA TTTTGGGTGG
  AGAATTGGTT CAGAGGTTAA GAGAACTTAG AAAGGACCTA GGTCCCATTC CCACAACACC
  CTCTTCTGAC CATTGTGGGT ACCAGGCACG AATGTGGTAT AATAGACTCA CACAGGCCAA
  ACACTCATAC ACATAAAAAA TAAAAGTAAA TAAAAAGAAA GGAAAAGTCT ATTTTTTTTC
  Y
  ACCATGTGGG GCTCCAGGGT TAGACTCAAG CTGCCAGGCT TGGCTACAAG TACTCTTACC
  CCTGAACCAT CTCAAAGCCC ACCCCATCCG ACCCCATTTT TTTTTTTGAG ACAGGTCTCA
  CGTAGCCGAA TCTGGTCTTA TACTCATTAC GTTGTCAAGG AAGAACTTGG ACTTCTCCTC
  TCAAGTGGGT GCCATGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325353628	CHEV_17_29497200	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262022333					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29579229 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	649 bp upstream
Rr405148	regulatory region 405148	475 bp upstream
Tssr143531	transcription start site region 143531	654 bp upstream
Tssr143532	transcription start site region 143532	668 bp upstream
Tssr143533	transcription start site region 143533	701 bp upstream
Tssr143534	transcription start site region 143534	714 bp upstream