rs262025605 SNP Detail

Summary

• ID
  rs262025605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108640889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGCATAG GGAATTCCAA
  GCCTTTTAAG ACTAAATAGG GAGATCCTAG ATCCTATCTC GTACAAAAAA AGGGGTGGGG
  GGCAAGGGAG ACAATGTTTT GTTTAGGCGG TATTTGTTTT ATATAGTTTC TTTTTATGAG
  TCTCTGGACT TCTGCTTCCA TGAAACTGTT GCTATACTAA CTTATTGAGG ATGGGTGTGG
  Y
  AGTGCAGACC TGTAGGCCCA GCAGTCTGAA AGTTAAGATA GGCTCATATG CGTTCAAGGC
  CAGCTTGGGT TGCTGAGTAA CTCAGTGTCA CTCTAGACTA GAATGAGACT GCTTTATTTA
  AAAAAAAAAA AAAAGATGTG ACTGTTGAAC TTTTAAACAC AGTAGCATGT TCATTTTTGT
  GACACAAGAA AAATCGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369592155	MGP_WTSI_6_108613922	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262025605					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369592155	MGP_WTSI_6_108613922	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108640889 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe40	basic helix-loop-helix family, member e40	Intron
Rr636159	regulatory region 636159	1941 bp distal
Rr636160	regulatory region 636160	within coordinates
Tssr58079	transcription start site region 58079	1932 bp downstream
Tssr58080	transcription start site region 58080	1585 bp downstream
Tssr58081	transcription start site region 58081	1150 bp downstream
Tssr58082	transcription start site region 58082	786 bp downstream
Tssr58083	transcription start site region 58083	811 bp upstream
Tssr58084	transcription start site region 58084	1085 bp upstream
Tssr58085	transcription start site region 58085	1988 bp upstream
Tssr62392	transcription start site region 62392	1057 bp downstream