rs262028142 SNP Detail

Summary

• ID
  rs262028142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGCCTCGA GGGCGCCCTC
  TGGTGCTTCT AACCCAGGCC TTGGGCGCAG TTTTCCTGGA GAATCCACAG TCTTGATTCT
  TTTAACAACT TTCTGGGTGC TCTACCACGT GCAGAGCTCC GCAAGGTACA GTGAAAACAA
  CACAAGATAA ACACCCCGTC TTACAGAGGA CCTCCAAATA AAGTGGATCA GGTCTGACAG
  R
  TAGTTTAATG TTTCCAAGTA TCAGTTTTTT GTTTTGTTTT GTTTTGGTAA AATCAACAAA
  AAAAATTTCT CCACCCAGAG GATGTGAAGA TTACAGAATA GGTATCCGTG CTGTGGTACT
  GTATAGAAAG TCAAGTTAGG ACAATCAAAC TCAGGCTGGT CAGTGACTGA CTAAACGAGT
  GTTCTCAGAT TCCAGAAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353666	CHEV_7_109399626	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262028142					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900319 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	128 bp distal
Rhog	ras homolog family member G	994 bp upstream
Rr652562	regulatory region 652562	1035 bp distal
Rr652563	regulatory region 652563	499 bp distal
Rr652564	regulatory region 652564	170 bp distal
Tssr2354	transcription start site region 2354	836 bp downstream
Tssr68328	transcription start site region 68328	1419 bp downstream
Tssr68329	transcription start site region 68329	1398 bp downstream
Tssr68330	transcription start site region 68330	857 bp downstream
Tssr73939	transcription start site region 73939	1738 bp upstream
Tssr73940	transcription start site region 73940	1691 bp upstream
Tssr73941	transcription start site region 73941	1638 bp upstream
Tssr73942	transcription start site region 73942	1553 bp upstream
Tssr73943	transcription start site region 73943	1026 bp upstream
Tssr73944	transcription start site region 73944	989 bp upstream
Tssr73945	transcription start site region 73945	974 bp upstream
Tssr73946	transcription start site region 73946	778 bp upstream
Tssr73947	transcription start site region 73947	633 bp upstream
Tssr73948	transcription start site region 73948	597 bp upstream
Tssr73949	transcription start site region 73949	564 bp upstream
Tssr73950	transcription start site region 73950	517 bp upstream