rs262045833 SNP Detail

Summary

• ID
  rs262045833
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127869287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCACAGA GACTCTTCCC
  TGTATAATCC AGACGTTTTG ATTACCCACC CTTTTTGTAC CTTTGGGTTC CAGGCTGCTA
  CACCTGGTTC CCTCTCTCCC TCTCCTTTTC CCTCCCCTTA CATGGGCAAG CTCAGTCTGA
  TCATGTCCTC TGGACTGGGA ATCCCTCGGT CTCTGGCTAT GTTCTCCTAC ATATCTGTAA
  Y
  GAACTTTATC CTCCTCCATA CCTAGGGGCA GTCATAGTCT TTCCTTCTTA TTTCTTTTTC
  ATTCTTTATG TGTTCTTGAT GTGTGTGTAC TGTTCTCTTC TTCCTTTCCA TGGATAACCT
  TCCAAGGATG GAAGGATGCC CAACCTGCAC AAGTGCCTAA ACCGGCTGAA CCAGCTGACC
  AGCCCAGTCA GGGCTTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382196981	MGP_WTSI_10_127470474	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262045833					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382196981	MGP_WTSI_10_127470474	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127869287 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2380	CpG island 2380	1850 bp proximal
Gm66417	predicted gene, 66417	within coordinates
Gm66418	predicted gene, 66418	209 bp upstream
Rr224438	regulatory region 224438	1313 bp proximal
Rr385474	regulatory region 385474	1395 bp upstream
Tssr96285	transcription start site region 96285	148 bp downstream
Tssr96286	transcription start site region 96286	66 bp downstream
Tssr96287	transcription start site region 96287	181 bp upstream
Tssr96288	transcription start site region 96288	214 bp upstream
Tssr96289	transcription start site region 96289	265 bp upstream
Tssr96290	transcription start site region 96290	1912 bp upstream
Tssr96291	transcription start site region 96291	1921 bp upstream
Tssr96292	transcription start site region 96292	1945 bp upstream