rs262048162 SNP Detail

Summary

• ID
  rs262048162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56811369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACCTAAG CCTGCCTGGG
  CTGCGTAACC CATCCGGTTG CATGGTTGCA CGCAGGTTGT ATATTATAGT GACTAAGCCC
  AGTTGGAGGA GGTAGGGAAG GTGAGCAGTT TTAGTCTGGA GGTTTTGCAA ACCACCTCTG
  TCCGGAGAAA AGATGTGTTA AAGTTCTGGG CCGTGTAGAC AGTTGTAAGT GAAAATAGTT
  R
  AGACTCGTCT TCAGTGGCAA GTTTGTAAAT CCAAGCATAT TACTGTTAAA TTACTTTCAT
  AATTGCTGAG GAGGAAAATC TTCAATGTGG TATATTACTA ACCCTCTGTC TTTTTTTAAT
  CAGAAAATGA CAACTCCCTC CTCAAATTAT GGTAATGTAT TACAGTACGT TTTACAATTA
  AGGTGCGGTG GTGACTTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859397	CHEV_19_56897427	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262048162					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56811369 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	395 bp downstream
Ccdc186	coiled-coil domain containing 186	747 bp upstream
Cpgi11092	CpG island 11092	312 bp distal
Rr406045	regulatory region 406045	519 bp downstream
Rr550140	regulatory region 550140	1021 bp distal
Rr550141	regulatory region 550141	758 bp distal
Rr550142	regulatory region 550142	257 bp distal
Tssr157215	transcription start site region 157215	973 bp downstream
Tssr159886	transcription start site region 159886	850 bp upstream
Tssr159887	transcription start site region 159887	717 bp upstream