rs262049291 SNP Detail

Summary

• ID
  rs262049291
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:142213429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCGGGCG CCAACGCCCG
  GTTCTTATAG CCGCGCCACC CCGCGGCTCG GCGCCCGCTC GGGCCCCGCT GGCCTTACGC
  CCGCGCCAAT GGGCGTCCGC AGGGCCCTCG CCCCGCCCCG GGACCGCCCC CGCAACTCGA
  GCCACGCGGG GAATGCGGGT CGGGGGCCCT GGGCACGGGG GTTGCCGGTG GGGGGGGGGA
  K
  TGGAGTGCCT GGTGGCAAAG ATGGGGGGGG GCTGTGCGCC CCAACAGGCC CACTAAATCC
  TGGGTGTCTA TCCCTAAAAA TCGAGGTCCC ATGTCATGTT TCCGGGGTGC CCTGTGCTTG
  TGCAACATGG GCGCGTGGTG CGAACCAACG TGCGTGGCAC CCTAGGCCTC AGTGGTAGTG
  GCAGGACCTG TGCTCAGTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454622	MGP_WTSI_7_149845597	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262049291					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454622	MGP_WTSI_7_149845597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142213429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19967	CpG island 19967	within coordinates
Cpgi19968	CpG island 19968	538 bp proximal
Gm49394	predicted gene, 49394	Intron
Igf2	insulin-like growth factor 2	Intron
Igf2os	insulin-like growth factor 2, opposite strand	1 bp upstream
Rr658248	regulatory region 658248	1706 bp distal
Rr658249	regulatory region 658249	867 bp distal
Rr658250	regulatory region 658250	214 bp distal
Rr658251	regulatory region 658251	340 bp distal
Rr658252	regulatory region 658252	within coordinates
Rr658253	regulatory region 658253	150 bp distal
Rr658254	regulatory region 658254	12 bp proximal
Rr658255	regulatory region 658255	1603 bp proximal
Tssr2464	transcription start site region 2464	1193 bp downstream
Tssr2465	transcription start site region 2465	1388 bp downstream
Tssr2466	transcription start site region 2466	1411 bp downstream
Tssr70241	transcription start site region 70241	1107 bp downstream
Tssr70242	transcription start site region 70242	1063 bp downstream
Tssr70243	transcription start site region 70243	793 bp downstream
Tssr70244	transcription start site region 70244	739 bp downstream
Tssr70245	transcription start site region 70245	660 bp downstream
Tssr70246	transcription start site region 70246	577 bp downstream
Tssr70247	transcription start site region 70247	514 bp downstream
Tssr70248	transcription start site region 70248	440 bp downstream
Tssr70249	transcription start site region 70249	642 bp upstream
Tssr70250	transcription start site region 70250	762 bp upstream
Tssr70251	transcription start site region 70251	788 bp upstream
Tssr70252	transcription start site region 70252	885 bp upstream
Tssr70253	transcription start site region 70253	931 bp upstream
Tssr70254	transcription start site region 70254	962 bp upstream
Tssr70255	transcription start site region 70255	1039 bp upstream
Tssr75888	transcription start site region 75888	925 bp upstream
Tssr75889	transcription start site region 75889	195 bp upstream
Tssr75890	transcription start site region 75890	1172 bp downstream
Tssr75891	transcription start site region 75891	1285 bp downstream
Tssr75892	transcription start site region 75892	1297 bp downstream
Tssr75893	transcription start site region 75893	1351 bp downstream
Tssr75894	transcription start site region 75894	1496 bp downstream
Tssr75895	transcription start site region 75895	1534 bp downstream
Tssr75896	transcription start site region 75896	1562 bp downstream
Tssr75897	transcription start site region 75897	1581 bp downstream
Tssr75898	transcription start site region 75898	1613 bp downstream