rs262073947 SNP Detail

Summary

• ID
  rs262073947
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:70111328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACTCCTGG AGATTGACCC
  GTACCTGAAG CCCTTCGCCG CGGACTTCCA GCGCAGGTAC CCGGGGGAAC CCCTCCACCG
  CCCTCCGCCT GCGGCCGGCC TTCCCGCGTG CGCGCGCGCG CCGCCCGACT CCCCCCTCTC
  CGCGCGGCCC CGCCCCCTCG CACGCCAATC ATGCGGTGGG CGTGGCTCCG GCTTCCCGGG
  S
  GAGTTCCTGA ACTTTTCTGC TGCACGTCCG CCCCGTGCTC GCTCACTTGC TCGCAGTCCC
  TGGCCGCGCG TCCTCCCCTA CGTGCTGGGA CAGGCAGCGC TGCAGCCACG CAGCGGCTTC
  CGGGACTCAC AGGCCACCCC CCTCTGGTCC TGGGAGTTGC AGTGGTCGTG ACCCAGGGCG
  TGTGTGATTT TGCTTTTCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss396744556	MGP_WTSI_16_70314685	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs262073947					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396744556	MGP_WTSI_16_70314685	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70111328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	within coordinates
Gbe1	1,4-alpha-glucan branching enzyme 1	within coordinates
Rr517848	regulatory region 517848	366 bp distal
Rr517849	regulatory region 517849	1430 bp proximal
Tssr138939	transcription start site region 138939	464 bp downstream
Tssr138940	transcription start site region 138940	437 bp downstream
Tssr138941	transcription start site region 138941	424 bp downstream
Tssr138942	transcription start site region 138942	369 bp downstream
Tssr138943	transcription start site region 138943	344 bp downstream
Tssr138944	transcription start site region 138944	291 bp downstream
Tssr138945	transcription start site region 138945	37 bp upstream
Tssr138946	transcription start site region 138946	227 bp upstream
Tssr138947	transcription start site region 138947	1308 bp upstream