rs262089245 SNP Detail

Summary

• ID
  rs262089245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121423233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGTCCTG CTCAAGCAGG
  CATTCCTTAC AAGGATTTGC TTCCAAGGAA GCACGATGCA CCAAATTCCT CTTTCTACCT
  AAGGCACCCT CCAGACCGAG GGCGAGCAGA TCTCCGAGGA CGGGAGCCGG GAGTGGTTAA
  GGGCTGGCAG AGGCGTTGAC TGAAACAGGG GGCTGAAGCT GAATCTCTGC CCACTTCTAA
  Y
  CCGTTTTCAT CAAACTCAAA ATGGAGATTT TAAAAGGCCC ACTCCAATGA CTTCTTAGAA
  AGTTATTTTA TTAGAATTTT AGACAGTTTA GGCAACAAGA CCATTCTAAC CGCAAATGCA
  CGTCTTACAA TAGAATATTT CAGTTCTGTT AATGACATGA CAGATTCATC CAAGTTTCTT
  CCAACAAAAA ACCCAACGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513552	CHEV_10_121024384	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262089245					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121423233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	8 bp distal
Rr402304	regulatory region 402304	1155 bp downstream
Rr402305	regulatory region 402305	302 bp downstream
Rr440247	regulatory region 440247	552 bp distal
Rr440248	regulatory region 440248	51 bp distal
Tbk1	TANK-binding kinase 1	541 bp upstream
Tssr96043	transcription start site region 96043	1086 bp downstream
Tssr96044	transcription start site region 96044	1065 bp downstream
Tssr99623	transcription start site region 99623	1445 bp upstream
Tssr99624	transcription start site region 99624	1418 bp upstream
Tssr99625	transcription start site region 99625	1358 bp upstream
Tssr99626	transcription start site region 99626	607 bp upstream
Tssr99627	transcription start site region 99627	525 bp upstream
Tssr99628	transcription start site region 99628	504 bp upstream
Tssr99629	transcription start site region 99629	476 bp upstream
Tssr99630	transcription start site region 99630	448 bp upstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	52 bp downstream