rs262091604 SNP Detail

Summary

• ID
  rs262091604
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165483096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATCTCAC TGGTGATCTC
  TCCCGCAGCA TGGTCAGCCC CTGGGCTACA GCTTGGCTCC AGAGGCGCCT CCTCCTTTTG
  CTTTGTATCC GGCTCTGCGA TAGTAGTACC TTCTGCTTTT CCAGAAGAGG TTTGTGGGGC
  TTTCTCCCTG ACCACTCCCT CCTCCTCAGG CATATTTGCG TCTGGGCTTT TCTGTCCGAG
  M
  CTATCTTCAT CTGCTACCCT CTCCTCAGAG GCTGTCCCTT CAGTGGCCTT CCCAGTGTCT
  GTATGCTCTC CCGGGGTTGT CTCTTCCCGT GGGCTTCCGC ACCCATTCTC AGCCTCTGGG
  CTGCCGGTTT GCGATGGCGC CTGGACCTCT GGATGACCCT GACTAGCTGT GTCTGGATTC
  TGTCCAACCT TCTCTCCAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320087013	CHEV_1_167585658	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262091604					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165483096 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr372388	regulatory region 372388	805 bp upstream
Rr422410	regulatory region 422410	1467 bp distal
Rr422411	regulatory region 422411	1710 bp distal
Rr422412	regulatory region 422412	118 bp distal
Tssr9810	transcription start site region 9810	1641 bp downstream
Tssr9811	transcription start site region 9811	241 bp downstream
Tssr9812	transcription start site region 9812	within coordinates