rs262092022 SNP Detail

Summary

• ID
  rs262092022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72894640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTGTGTT TTCTGGGGAT
  GCACCACCTT TTTTTTTTTT TTTTTTTTTT TAAAAGATGT GTTTTTGTAT GTTTTGTCTG
  CTGTAAAGGC AGCTTGTGTA TGCAGTGCCT GTGGAGACCA GAAGAGTTGG GAACTGTCCT
  CCTAGTATTT GTTCTCCACC ATTGAGCTGT TTCTTCAGCT CTGAAATCTT TAAAAGACAG
  Y
  ATCTCATATA GCCCAGGCCA GCTACCAGTT GGCTATGTAG CCTTGAATTC TACATGCTCT
  TGCCTCCATT ATCTTTAGAT TCTTTAAGTA TGACTTTCTA AAGTAAATGG GCTGGCAAGG
  TGTCTCCATG GGTAAGGGGA CTCGCTGAAC AAGTCTGCCA TCAGAGGTTC ATTTCTGGAA
  CCCACAGGAT GGAGAGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378030029	MGP_WTSI_9_72835165	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262092022					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378030029	MGP_WTSI_9_72835165	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72894640 () rs orientation: forward

Symbol	Name	Function Class
Ccpg1	cell cycle progression 1	within coordinates
Cpgi22024	CpG island 22024	1181 bp distal
Gm44503	predicted readthrough transcript (NMD candidate), 44503	within coordinates
Pierce2	piercer of microtubule wall 2	1982 bp upstream
Rr401512	regulatory region 401512	1736 bp downstream
Rr682884	regulatory region 682884	2000 bp distal
Rr682885	regulatory region 682885	1743 bp distal
Rr682886	regulatory region 682886	1074 bp distal
Rr682887	regulatory region 682887	1557 bp distal
Tssr86066	transcription start site region 86066	1952 bp downstream
Tssr86067	transcription start site region 86067	1934 bp downstream
Tssr86068	transcription start site region 86068	1791 bp downstream
Tssr86069	transcription start site region 86069	1716 bp downstream
Tssr90503	transcription start site region 90503	1961 bp upstream