rs262092552 SNP Detail

Summary

• ID
  rs262092552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:58421880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGGGCGGC CGCACCTGCT
  GTCACTCCCG CGGCCGGCCG CGGCGGACCA GGCCTGCGGC CCGCACTCCC CCGCAGCCTC
  CGCGGCCCTC CCGCCGCCCG GCCCCGCTCG GCTCAGCCCC GCTCGGCTCC GCTCCGCTCC
  GCTCCCCGCC TCAGGCCGCA CTCGGCCGCG TCCCCTCAGC CACGAGCTGC GAGGCTCCGT
  R
  GACTCACCGG GCCTCCCTCG CCGCGGTGCG GCCGCTCCCG TCTCCCCGCC GCTCCCGCGC
  TACCCCCGGG CGTTGGGCGC GGGCCGCGGG GCGTCCGCAG TAACGGGCCC GCGGAGGGCG
  GCGGCGCGCG GAGGGCGGGG CGGGGCGGGG CGGGGCGGAC CCGCAAGCCT GGCGCCCGCC
  GTGGCCGGCC GGCGCGCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss388759164	MGP_WTSI_13_58375427	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs262092552					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388759164	MGP_WTSI_13_58375427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58421880 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5724	CpG island 5724			within coordinates
Gkap1	G kinase anchoring protein 1			Intron
				Splice-Site
Rr481008	regulatory region 481008			within coordinates
Rr481009	regulatory region 481009			112 bp proximal
Tssr120072	transcription start site region 120072			186 bp upstream
Tssr122823	transcription start site region 122823			30 bp downstream
Tssr122824	transcription start site region 122824			55 bp downstream
Tssr122825	transcription start site region 122825			197 bp downstream
Tssr122826	transcription start site region 122826			274 bp downstream
Tssr122827	transcription start site region 122827			301 bp downstream
Tssr122828	transcription start site region 122828			395 bp downstream
Tssr122829	transcription start site region 122829			438 bp downstream
Tssr122830	transcription start site region 122830			767 bp downstream
Tssr122831	transcription start site region 122831			1581 bp downstream
Tssr122832	transcription start site region 122832			1634 bp downstream