rs262093907 SNP Detail

Summary

• ID
  rs262093907
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:43113836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCCTGCT CTCCTCGCAG
  ACCTCTGGAC AAGTCTGTGC TGTGTGAATA TGCTTCCTTC CTAGAAGAAA GAGCCTGTGG
  GTGGGGATAA GAGCAAAGGC AGGGACCAGA GCTCACCTTG TCTGAAGGAG GAGGTCTAAG
  CTGGACTCTT AGGTCTGAGA GAGGCCTGGA CCTCACTTAG GTGTGACGGG GGAGGGCTAG
  K
  GCCTGAATCC GTGGGACCGA GGGAATTAAG ACTGGGGTTT GGACTCAGGT CTGAAGGAGG
  AGGATTGAAG TCTGAACCCC TGGGTTTGAG GGAAGAGGGG GTGGGTCTTG ACCTCAGAGT
  CTGAAGGAGG GCTGGAGTCT GGAGTCCTCA GACTGATGGA ATAAGATTGG GGTTTGGACA
  CCTAAGTTTG CGGGCTGAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371132449	MGP_WTSI_7_50719782	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262093907					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371132449	MGP_WTSI_7_50719782	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43113836 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18932	CpG island 18932			419 bp proximal
Cpgi18933	CpG island 18933			1750 bp proximal
Etfbl	electron transferring flavoprotein, beta polypeptide like			825 bp downstream
Gm39000	predicted gene, 39000			within coordinates
Rr400282	regulatory region 400282			1318 bp upstream
Rr645966	regulatory region 645966			431 bp proximal
Rr645967	regulatory region 645967			1096 bp proximal
Rr645968	regulatory region 645968			1158 bp proximal
Rr645969	regulatory region 645969			1166 bp proximal
Rr645970	regulatory region 645970			1858 bp proximal
Tssr66006	transcription start site region 66006			1299 bp downstream
Tssr66007	transcription start site region 66007			1227 bp downstream
Tssr66008	transcription start site region 66008			1197 bp downstream
Tssr66009	transcription start site region 66009			1186 bp downstream
Tssr66010	transcription start site region 66010			1596 bp upstream
Tssr72134	transcription start site region 72134			160 bp upstream
Tssr72135	transcription start site region 72135			1151 bp downstream
Vsig10l	V-set and immunoglobulin domain containing 10 like			Intron
				Noncoding-Transcript-Variant