rs262117649 SNP Detail

Summary

• ID
  rs262117649
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:49736727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCTCCT CCTTGGCATC
  TTGTGACTAC AGCTCTACCA CCATAGACAC CACTTGTCAA CTACTGTCTC CATTTTTCCA
  ATCCCTTATT GACCAGTCCT CAGCCTAACC TGTTCGTAGC TTCCCTCAGT GTGTTCAACG
  TCCCTGTCTC ACTTGCAGCC TCTCTATCAA AACACAGAGT AGTCAGAATC CCAAATTCTG
  W
  GTTTTCCAAA CATCTGATTC ACCTCAGACC TTCTGGAACC TACTTGAGAG CCAGAGGTCT
  GCAGAAGCGT CAACAAAAGC AGCAGTGTTA AAGACCCACT GTCTAGAAGC CCTTCAGCAC
  TGGACGGACA CCCTCCTCAC CCCTCTACAC CAAAGCAGAA ACTTGTCTCT TATAAGAGGC
  CTCTTTAGGC TATACCCGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383316500	MGP_WTSI_11_49659402	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262117649					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383316500	MGP_WTSI_11_49659402	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:49736727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2801	CpG island 2801	345 bp proximal
Gm74054	predicted gene, 74054	within coordinates
Mapk9	mitogen-activated protein kinase 9	851 bp upstream
Rr446291	regulatory region 446291	441 bp distal
Rr446292	regulatory region 446292	883 bp distal
Rr446293	regulatory region 446293	730 bp distal
Rr446294	regulatory region 446294	within coordinates
Rr446295	regulatory region 446295	484 bp proximal
Rr446296	regulatory region 446296	627 bp proximal
Rr446297	regulatory region 446297	864 bp proximal
Tssr3485	transcription start site region 3485	1038 bp upstream
Tssr101198	transcription start site region 101198	832 bp upstream
Tssr101199	transcription start site region 101199	864 bp upstream
Tssr101200	transcription start site region 101200	905 bp upstream
Tssr101201	transcription start site region 101201	984 bp upstream