rs262119469 SNP Detail

Summary

• ID
  rs262119469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71247844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGGGTTTT GTAGGACTGA AAGGGGGGGG GGGAGGCGGA
  GGGAGGGAGC TTTGGGGTTG GAAGATTCCA TTTGCAGGTC AGTTCCCCTG CAGTCAGGAA
  R
  TGGGAGAGGC TAGCGGGTCT GGTATGTGGA TCTCCTTATC AGAAGCTTCA GCAGTCAACA
  GTCAACTCTG GGCTTCTCAG TCCATCTGAG GTTTTTAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321817328	CHEV_6_71220854	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262119469					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71247844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	542 bp proximal
Krcc1	lysine-rich coiled-coil 1	817 bp upstream
Mir8112	microRNA 8112	811 bp upstream
Rr379579	regulatory region 379579	960 bp downstream
Rr379580	regulatory region 379580	within coordinates
Rr631921	regulatory region 631921	963 bp distal
Rr631922	regulatory region 631922	1728 bp distal
Rr631923	regulatory region 631923	674 bp distal
Rr631924	regulatory region 631924	327 bp proximal
Rr631925	regulatory region 631925	1170 bp proximal
Tssr56988	transcription start site region 56988	14 bp upstream
Tssr56989	transcription start site region 56989	715 bp upstream
Tssr56990	transcription start site region 56990	812 bp upstream
Tssr61348	transcription start site region 61348	134 bp upstream
Tssr61349	transcription start site region 61349	112 bp upstream
Tssr61350	transcription start site region 61350	621 bp downstream