rs262130665 SNP Detail

Summary

• ID
  rs262130665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:10784886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAATAACT AATGTAGCTG
  TTCATAACTC ATTGTGAGAA AAACAATGTC ATTTGATATA AGCAAGGACA ATACAGACTC
  AGGTTTTTGA CAGTTTGTTG CCAATATATC CTGTTTACAT TTTAGTTGTG GCCTAGGGTT
  TTGCCATTTT TATCATTCTT TTTCATGCTG TAAGTATTAA CTGCACTTAA AGTACAGATT
  R
  GGTTAAGAAC TGACAAGCTG GAAAAGGACA AAAGCCAGTT TTCATGTGTG CAGTATAATT
  TTACTTAAAA GATAGTCTTT AAACATTATA GTTTCAATAG CTGTCAGAAA AGAAAATAAT
  GAAACCAAAA TTTTTGGCTT ACGAGATCCT CTGATTTTAA TAGGTTATAC ATTTTGCCAC
  ATGTGAAGAA TAGCTATTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399687758	MGP_WTSI_18_10784884	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262130665					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399687758	MGP_WTSI_18_10784884	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10784886 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm58661	predicted gene, 58661			39 bp downstream
Mib1	MIB E3 ubiquitin protein ligase 1			Intron
				Noncoding-Transcript-Variant
Mir1a-2	microRNA 1a-2			595 bp downstream
Mir1b	microRNA 1b			560 bp upstream
Mir133a-1	microRNA 133a-1			1910 bp upstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene			within coordinates
Mirc18	microRNA cluster 18, including Mir1b through Mir1a-2			560 bp proximal
Rr533800	regulatory region 533800			77 bp distal
Rr533801	regulatory region 533801			449 bp proximal
Rr533802	regulatory region 533802			592 bp proximal
Rr533803	regulatory region 533803			1451 bp proximal
Tssr152436	transcription start site region 152436			1974 bp upstream
Tssr152437	transcription start site region 152437			592 bp downstream