rs262133843 SNP Detail

Summary

• ID
  rs262133843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156267242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTAACAA CATCAAAATT ATAACAAGAT
  TATGTAATTC TACCAAGAAT TATTAATTAG CACTGCCCTG TTAGAATGAG CAGTTTTCTC
  TGTAGCCCTG TATGGACAGC CCGCCTCCAG CGCTGCCCCT CACTGGGCAC CTCTGTGCCC
  Y
  ACACACTTCC TCCCCCTTTC ATGGTTACCT TGGGTAGTTG TCTCGGTAAA TAAGTGTAGG
  CGCAAACAGG AAGTACAGGT ACTGGTTGAC TGTGGGTAGT GGATCTTTGC CTAAAAAAGG
  AAAGCTATTG GATTACAAGA TCTTTGACTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320072194	CHEV_1_158369803	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262133843					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156267242 () rs orientation: forward

Symbol	Name	Function Class
Rr31351	regulatory region 31351	1582 bp distal
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	23 bp upstream
Tssr14442	transcription start site region 14442	353 bp upstream
Tssr14443	transcription start site region 14443	1710 bp downstream
Tssr14444	transcription start site region 14444	1728 bp downstream