rs262139822 SNP Detail

Summary

• ID
  rs262139822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124045490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATCGCGA TAAAGGCTCA
  TTGTCTCGCG CGAGCGCGCC CCAGCAGCGA ATTTCGGGGC AGCCGTGGCC GGGAAGAGGA
  GTTGCATGTG TCGCTTCAGC TGGCGGGAGC GGAGGCGGCG GGGGCCGTGC GACCGGCTGG
  GTAATGAGCG CTCTCATTCG CGCTGCTGCG GCGGCCTCCC CGGGAGCTGG CGGCGCTGCC
  R
  AGGCGGCCCA GGCGCTGCCT AAAGCAGGAA GGGGGCCGGG CCGGGCGTCT CCACGCCCGC
  CCACATGGGG GCCTCCTGTG GAGTCCCCGG GATGTCCCCC TTAGCCCAGC CTTCCAGCGG
  GCTACCTGTC CTTTTCCCCA GGCCTGGCCC GATTTCCCCT CCCCAGGCTG TGGCATTGCC
  GTCCTTGTCC CTGGCTTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366549348	MGP_WTSI_5_124357436	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262139822					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366549348	MGP_WTSI_5_124357436	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124045490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16594	CpG island 16594	within coordinates
Denr	density-regulated protein	within coordinates
Rr124363	regulatory region 124363	within coordinates
Rr399353	regulatory region 399353	94 bp downstream
Tssr48807	transcription start site region 48807	230 bp downstream
Tssr48808	transcription start site region 48808	217 bp downstream
Tssr48809	transcription start site region 48809	135 bp downstream
Tssr48810	transcription start site region 48810	112 bp downstream
Tssr48811	transcription start site region 48811	40 bp downstream
Tssr48812	transcription start site region 48812	95 bp upstream
Tssr48813	transcription start site region 48813	135 bp upstream
Tssr48814	transcription start site region 48814	145 bp upstream
Tssr48815	transcription start site region 48815	169 bp upstream
Tssr48816	transcription start site region 48816	195 bp upstream
Tssr48817	transcription start site region 48817	655 bp upstream
Tssr48818	transcription start site region 48818	751 bp upstream
Tssr48819	transcription start site region 48819	1663 bp upstream
Tssr48820	transcription start site region 48820	1697 bp upstream