rs262140873 SNP Detail

Summary

• ID
  rs262140873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34355360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTTGCTA GCCTCTATAA
  CGTGGGGTTG TGCCAATCTC AGCTGCCCCT CAAGGGTAGT CGCGATTTCC AGTGTGGAAA
  AACTGTCCTG AGTAACTTAG GAGCCTTGCC AAAGTTTGCA AGTGCAAACT GCCCCTTCAG
  AGTGGCAGTG GAGGAAGTCA TCTGGTAGTT TGTCGCCTCT GACTCGGATG TGTCAAGAGC
  Y
  CCAACGTGGG ATTAAAAATA CATAGAAAAT GCCCAATGAG ATTGCAAATG AGTGGGGTTT
  TGAAAGCTGG TTTAGAAGAC TGAAGCATTA GCTCAGTGGT AGAGTACTTG TAAGACGGAC
  TCTGTTCATT CTCCAGGATT GTTTAAAAAA AAAAGTTATG GGGGCTGGAG AGATGGCTCA
  GAGGTTAAGA GCACGGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400234964	MGP_WTSI_18_34381961	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262140873					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400234964	MGP_WTSI_18_34381961	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34355360 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	within coordinates
Cpgi9813	CpG island 9813	585 bp distal
Rr370354	regulatory region 370354	1406 bp downstream
Rr535610	regulatory region 535610	1313 bp distal
Rr535611	regulatory region 535611	1369 bp distal
Rr535612	regulatory region 535612	651 bp distal
Rr535613	regulatory region 535613	938 bp distal
Rr535614	regulatory region 535614	40 bp distal
Rr535615	regulatory region 535615	269 bp proximal
Tssr150444	transcription start site region 150444	1376 bp downstream
Tssr150445	transcription start site region 150445	1331 bp downstream
Tssr150446	transcription start site region 150446	1287 bp downstream
Tssr150447	transcription start site region 150447	1187 bp downstream
Tssr152786	transcription start site region 152786	648 bp upstream