rs262161685 SNP Detail

Summary

• ID
  rs262161685
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54601627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTAGTA CTGGACTGGA
  GAGATGGCTC AGTGATTAAG AGCACTGACT ACTCTTCCAG ACATCCTGAG TTCAAATCCC
  AGCAACCACA TGGTGGCTCA CAACCACCCA TAATGAGATC TGATGCCCTC TTCTGGTGTG
  TCTGAAGACA GCTACAGTAT ACTTATATAT AATAAATAAA TAAATAAATA AAATCTTTTA
  W
  AAAAACCTAC AGCTACAGTG TACTTATAAT AAATAAATAA TAAGTAAATA AATAAAATCT
  TTTTAAAAAA CCTAATACTA TCAGATAATA TTTCTTTAGC CTGTACTGGC TTAAGGAGGT
  CCTTCCCTCC GAAAAAGTTT TGTATAGGAA ATCTGGTTTT CTGTCACTAG AATTTGTACT
  TTAACAGAGT TGTGTAGTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358013673	MGP_WTSI_3_54498128	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262161685					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358013673	MGP_WTSI_3_54498128	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54601627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	1019 bp distal
Gm65558	predicted gene, 65558	1545 bp upstream
Rr397672	regulatory region 397672	1344 bp downstream
Rr576829	regulatory region 576829	1584 bp distal
Rr576830	regulatory region 576830	1091 bp distal
Rr576831	regulatory region 576831	631 bp distal
Rr576832	regulatory region 576832	60 bp distal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29131	transcription start site region 29131	1406 bp downstream
Tssr29132	transcription start site region 29132	1370 bp downstream
Tssr29133	transcription start site region 29133	1338 bp downstream
Tssr29134	transcription start site region 29134	1314 bp downstream
Tssr29135	transcription start site region 29135	1151 bp downstream
Tssr29136	transcription start site region 29136	1127 bp downstream
Tssr29137	transcription start site region 29137	1105 bp downstream